Index

A

add_reaction() (pystospa.Voxel method)

advance() (pystospa.Simulator method)

C

clear_reactions() (pystospa.Voxel method)

G

g_f (C++ type) get_extrande_ratio() (pystospa.Voxel method) get_molecules() (pystospa.Simulator method) (pystospa.Voxel method) get_propensity() (pystospa.Reaction method) get_rate() (pystospa.Reaction method)

get_reactions() (pystospa.Voxel method) get_seed() (pystospa.Simulator method) get_time() (pystospa.Simulator method) get_total_propensity() (pystospa.Voxel method) get_voxel_size() (pystospa.Voxel method) get_voxels() (pystospa.Simulator method)

M

module pystospa

O

operator!= (C++ function)

operator== (C++ function)

P

p_f (C++ type)

pystospa module

R

Reaction (class in pystospa)

run() (pystospa.Simulator method)

S

set_rate() (pystospa.Reaction method) set_seed() (pystospa.Simulator method) Simulator (class in pystospa) step() (pystospa.Simulator method) StoSpa2 (C++ type) StoSpa2::add_diffusion (C++ function) StoSpa2::add_reaction (C++ function) StoSpa2::Reaction (C++ class) StoSpa2::Reaction::diffusion_idx (C++ member) StoSpa2::Reaction::get_propensity (C++ function) StoSpa2::Reaction::get_rate (C++ function) StoSpa2::Reaction::m_initial_rate (C++ member) StoSpa2::Reaction::m_propensity (C++ member) StoSpa2::Reaction::m_rate (C++ member) StoSpa2::Reaction::operator!= (C++ function) StoSpa2::Reaction::operator<< (C++ function) StoSpa2::Reaction::operator== (C++ function) StoSpa2::Reaction::Reaction (C++ function) StoSpa2::Reaction::set_rate (C++ function) StoSpa2::Reaction::stoichiometry (C++ member) StoSpa2::Reaction::update_properties (C++ function) StoSpa2::read_matrix (C++ function) StoSpa2::Simulator (C++ class) StoSpa2::Simulator::advance (C++ function) StoSpa2::Simulator::exponential (C++ function) StoSpa2::Simulator::get_molecules (C++ function) StoSpa2::Simulator::get_seed (C++ function) StoSpa2::Simulator::get_time (C++ function) StoSpa2::Simulator::get_voxels (C++ function) StoSpa2::Simulator::inf (C++ member) StoSpa2::Simulator::initialise_next_reaction_times (C++ function) StoSpa2::Simulator::lookup_times (C++ member) StoSpa2::Simulator::m_gen (C++ member) StoSpa2::Simulator::m_seed (C++ member) StoSpa2::Simulator::m_time (C++ member) StoSpa2::Simulator::m_uniform (C++ member)

StoSpa2::Simulator::m_voxels (C++ member) StoSpa2::Simulator::next_reaction_times (C++ member) StoSpa2::Simulator::run (C++ function) StoSpa2::Simulator::save (C++ function), [1] StoSpa2::Simulator::set_seed (C++ function) StoSpa2::Simulator::Simulator (C++ function) StoSpa2::Simulator::step (C++ function) StoSpa2::Simulator::update_next_reaction_time (C++ function) StoSpa2::Simulator::write_header (C++ function), [1] StoSpa2::split (C++ function) StoSpa2::Voxel (C++ class) StoSpa2::Voxel::a_0 (C++ member) StoSpa2::Voxel::add_extrande (C++ function) StoSpa2::Voxel::add_reaction (C++ function) StoSpa2::Voxel::add_vector (C++ function) StoSpa2::Voxel::clear_reactions (C++ function) StoSpa2::Voxel::get_extrande_ratio (C++ function) StoSpa2::Voxel::get_molecules (C++ function) StoSpa2::Voxel::get_reactions (C++ function) StoSpa2::Voxel::get_total_propensity (C++ function) StoSpa2::Voxel::get_voxel_size (C++ function) StoSpa2::Voxel::is_growing (C++ function) StoSpa2::Voxel::m_extrande_ratio (C++ member) StoSpa2::Voxel::m_extrande_reaction (C++ member) StoSpa2::Voxel::m_growing (C++ member) StoSpa2::Voxel::m_growth_func (C++ member) StoSpa2::Voxel::m_initial_voxel_size (C++ member) StoSpa2::Voxel::m_molecules (C++ member) StoSpa2::Voxel::m_reactions (C++ member) StoSpa2::Voxel::m_voxel_size (C++ member) StoSpa2::Voxel::operator!= (C++ function) StoSpa2::Voxel::operator<< (C++ function) StoSpa2::Voxel::operator== (C++ function) StoSpa2::Voxel::pick_reaction (C++ function) StoSpa2::Voxel::subtract_vector (C++ function) StoSpa2::Voxel::update_properties (C++ function) StoSpa2::Voxel::Voxel (C++ function), [1], [2]

V

Voxel (class in pystospa)